A database of RNA aptamers
Example: RNA aptamer SELEX ATP-aptamer Structure
| Year | Author | Title | Journal |
|---|---|---|---|
| 1997 | Urvil, P. T., Kakiuchi, N., Zhou, D. M., Shimotohno, K. | Selection of RNA aptamers that bind specifically to the NS3 protease of hepatitis C virus | European journal of biochemistry |
| 1997 | Kumar, P. K., Machida, K., Urvil, P. T., Kakiuchi, N., Vishnuvardhan, D. | Isolation of RNA aptamers specific to the NS3 protein of hepatitis C virus from a pool of completely random RNA | Virology |
| 2000 | Fukuda, K., Vishnuvardhan, D., Sekiya, S., Hwang, J., Kakiuchi, N. | Isolation and characterization of RNA aptamers specific for the hepatitis C virus nonstructural protein 3 protease | European journal of biochemistry |
| 2000 | Hwang, J., Fauzi, H., Fukuda, K., Sekiya, S., Kakiuchi, N., Shimotohno, K., Taira, K., Kusakabe, I., & Nishikawa, S. | The RNA aptamer-binding site of hepatitis C virus NS3 protease | Biochemical and biophysical research communications |
| 2003 | Nishikawa, F., Kakiuchi, N., Funaji, K., Fukuda, K., Sekiya, S., & Nishikawa, S. | Inhibition of HCV NS3 protease by RNA aptamers in cells | Nucleic acids research |
| 2004 | Fukuda, K., Umehara, T., Sekiya, S., Kunio, K., Hasegawa, T., & Nishikawa, S. | An RNA ligand inhibits hepatitis C virus NS3 protease and helicase activities | Biochemical and biophysical research communications |
| 2012 | Vaughan, R., Li, Y., Fan, B., Ranjith-Kumar, C. T., & Kao, C. C. | RNA binding by the NS3 protease of the hepatitis C virus | Virus research |
| 1993 | Giver, L., Bartel, D., Zapp, M., Pawul, A., Green, M., & Ellington, A. D. | Selective optimization of the Rev-binding element of HIV-1 | Nucleic acids research |
| 1993 | Giver, L., Bartel, D. P., Zapp, M. L., Green, M. R., & Ellington, A. D. | Selection and design of high-affinity RNA ligands for HIV-1 Rev | Gene |
| 1994 | Leclerc, F., Cedergren, R., & Ellington, A. D. | A three-dimensional model of the Rev-binding element of HIV-1 derived from analyses of aptamers | Nature structural biology |
| 1996 | Symensma, T. L., Giver, L., Zapp, M., Takle, G. B., & Ellington, A. D. | RNA aptamers selected to bind human immunodeficiency virus type 1 Rev in vitro are Rev responsive in vivo | Journal of virology |
| 1998 | Konopka, K., Düzgüneş, N., Rossi, J., & Lee, N. S. | Receptor ligand-facilitated cationic liposome delivery of anti-HIV-1 Rev-binding aptamer and ribozyme DNAs | Journal of drug targeting |
| 2004 | Wilkinson, T. A., Zhu, L., Hu, W., & Chen, Y. | Retention of conformational flexibility in HIV-1 Rev-RNA complexes | Biochemistry |
| 2018 | Dearborn, A. D., Eren, E., Watts, N. R., Palmer, I. W. | Structure of an RNA Aptamer that Can Inhibit HIV-1 by Blocking Rev-Cognate RNA (RRE) Binding and Rev-Rev Association | Structure |
| 2002 | Biroccio, A., Hamm, J., Incitti, I., De Francesco, R., & Tomei, L. | Selection of RNA aptamers that are specific and high-affinity ligands of the hepatitis C virus RNA-dependent RNA polymerase | Journal of virology |
| 2003 | Vo, N. V., Oh, J. W., & Lai, M. M. | Identification of RNA ligands that bind hepatitis C virus polymerase selectively and inhibit its RNA synthesis from the natural viral RNA templates | Virology |
| 2011 | Roh, C., Kim, S. E., & Jo, S. K. | Label free inhibitor screening of hepatitis C virus (HCV) NS5B viral protein using RNA oligonucleotide | Sensors |
| 2013 | Lee, C. H., Lee, Y. J., Kim, J. H., Lim, J. H. | Inhibition of hepatitis C virus (HCV) replication by specific RNA aptamers against HCV NS5B RNA replicase | Journal of virology |
| 2015 | Lee, C. H., Lee, S. H., Kim, J. H., Noh, Y. H. | Pharmacokinetics of a Cholesterol-conjugated Aptamer Against the Hepatitis C Virus (HCV) NS5B Protein | Molecular therapy. Nucleic acids |
| 2023 | Kim, T. H., & Lee, S. W. | Generation of hepatitis C virus-resistant liver cells by genome editing-mediated stable expression of RNA aptamer | Molecular therapy. Methods & clinical development |
| 1996 | Xu, W., & Ellington, A. D. | Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope | Proceedings of the National Academy of Sciences of the United States of America |
| 1996 | Ye, X., Gorin, A., Ellington, A. D., & Patel, D. J. | Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex | Nature structural biology |
| 1995 | Yamamoto, R., Toyoda, S., Viljanen, P., Machida, K. | In vitro selection of RNA aptamers that can bind specifically to Tat protein of HIV-1 | Nucleic acids symposium series |
| 2000 | Yamamoto, R., Katahira, M., Nishikawa, S., Baba, T. | A novel RNA motif that binds efficiently and specifically to the Ttat protein of HIV and inhibits the trans-activation by Tat of transcription in vitro and in vivo | Genes to cells : devoted to molecular & cellular mechanisms |
| 2000 | Kawakami, J., Imanaka, H., Yokota, Y., & Sugimoto, N. | In vitro selection of aptamers that act with Zn2+ | Journal of inorganic biochemistry |
| 2003 | Matsugami, A., Kobayashi, S., Ouhashi, K., Uesugi, S., Yamamoto, R., Taira, K., Nishikawa, S., Kumar, P. K., & Katahira, M. | Structural basis of the highly efficient trapping of the HIV Tat protein by an RNA aptamer | Structure (London |
| 2017 | Yamaoki, Y., Nagata, T., Mashima, T., & Katahira, M. | Development of an RNA aptamer that acquires binding capacity against HIV-1 Tat protein via G-quadruplex formation in response to potassium ions | Chemical communications |
| 2020 | Caglayan, M. O., & Üstündağ, Z. | Spectrophotometric ellipsometry based Tat-protein RNA-aptasensor for HIV-1 diagnosis | Spectrochimica acta. Part A |
| 2023 | Eladl, O., Yamaoki, Y., Kondo, K., Nagata, T., & Katahira, M. | Complex Formation of an RNA Aptamer with a Part of HIV-1 Tat through Induction of Base Triples in Living Human Cells Proven by In-Cell NMR | International journal of molecular sciences |
| 2004 | Hwang, B., Cho, J. S., Yeo, H. J., Kim, J. H., Chung, K. M. | Isolation of specific and high-affinity RNA aptamers against NS3 helicase domain of hepatitis C virus | RNA |
| 1992 | Tuerk, C., MacDougal, S., & Gold, L. | RNA pseudoknots that inhibit human immunodeficiency virus type 1 reverse transcriptase | Proceedings of the National Academy of Sciences of the United States of America |
| 2000 | Kensch, O., Connolly, B. A., Steinhoff, H. J., McGregor, A., Goody, R. S., & Restle, T. | HIV-1 reverse transcriptase-pseudoknot RNA aptamer interaction has a binding affinity in the low picomolar range coupled with high specificity | The Journal of biological chemistry |
| 2002 | Joshi, P., & Prasad, V. R. | Potent inhibition of human immunodeficiency virus type 1 replication by template analog reverse transcriptase inhibitors derived by SELEX (systematic evolution of ligands by exponential enrichment) | Journal of virology |
| 2014 | Aeksiri, N., Songtawee, N., Gleeson, M. P., Hannongbua, S., & Choowongkomon, K. | Insight into HIV-1 reverse transcriptase-aptamer interaction from molecular dynamics simulations | Journal of molecular modeling |
| 2020 | Nguyen, P. D. M., Zheng, J., Gremminger, T. J., Qiu, L. | Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase | Nucleic acids research |
| 2020 | Gruenke, P. R., Alam, K. K., Singh, K., & Burke, D. H. | 2'-fluoro-modified pyrimidines enhance affinity of RNA oligonucleotides to HIV-1 reverse transcriptase | RNA |
| 1995 | Allen, P., Worland, S., & Gold, L. | Isolation of high-affinity RNA ligands to HIV-1 integrase from a random pool | Virology |
| 1995 | Tian, Y., Adya, N., Wagner, S., Giam, C. Z., Green, M. R., & Ellington, A. D. | Dissecting protein:protein interactions between transcription factors with an RNA aptamer | RNA |
| 2005 | Bryant, K. F., Cox, J. C., Wang, H., Hogle, J. M., Ellington, A. D., & Coen, D. M. | Binding of herpes simplex virus-1 US11 to specific RNA sequences | Nucleic acids research |
| 2009 | Ahn, D. G., Jeon, I. J., Kim, J. D., Song, M. S. | RNA aptamer-based sensitive detection of SARS coronavirus nucleocapsid protein | The Analyst |
| 2022 | Gruenke, P. R., Aneja, R., Welbourn, S., Ukah, O. B. | Selection and identification of an RNA aptamer that specifically binds the HIV-1 capsid lattice and inhibits viral replication | Nucleic acids research |
| 2005 | Misono, T. S., & Kumar, P. K. | Selection of RNA aptamers against human influenza virus hemagglutinin using surface plasmon resonance | Analytical biochemistry |
| 2011 | Toscano-Garibay, J. D., Benítez-Hess, M. L., & Alvarez-Salas, L. M. | Isolation and characterization of an RNA aptamer for the HPV-16 E7 oncoprotein | Archives of medical research |
| 2012 | Hwang, S. D., Midorikawa, N., Punnarak, P., Kikuchi, Y., Kondo, H. | Inhibition of Hirame rhabdovirus growth by RNA aptamers | Journal of fish diseases |
| 2006 | Gopinath, S. C. B., Misono, T. S., Kawasaki, K., Mizuno, T., Imai, M. | An RNA aptamer that distinguishes between closely related human influenza viruses and inhibits haemagglutinin-mediated membrane fusion | The Journal of general virology |
| 2015 | Duclair, S., Gautam, A., Ellington, A., & Prasad, V. R. | High-affinity RNA Aptamers Against the HIV-1 Protease Inhibit Both In Vitro Protease Activity and Late Events of Viral Replication | Molecular therapy. Nucleic acids |
| 2011 | Feng, H., Beck, J., Nassal, M., & Hu, K. H. | A SELEX-screened aptamer of human hepatitis B virus RNA encapsidation signal suppresses viral replication | PloS one |
| 2018 | Pan, Q., Law, C. O., Yung, M. M., Han, K. C. | Novel RNA aptamers targeting gastrointestinal cancer biomarkers CEA, CA50 and CA72-4 with superior affinity and specificity | PLoS One |
| 2018 | Fülle, L., Steiner, N., Funke, M., Gondorf, F., Pfeiffer, F. | RNA aptamers recognizing murine CCL17 inhibit T cell chemotaxis and reduce contact hypersensitivity in vivo | Molecular Therapy |
| 2014 | Hanazato, M., Nakato, G., Nishikawa, F., Hase, K., Nishikawa, S., & Ohno, H | Selection of an aptamer against mouse GP2 by SELEX | Cell structure and function |
| 2014 | Kwon, H. M., Lee, K. H., Han, B. W., Han, M. R. | An RNA aptamer that specifically binds to the glycosylated hemagglutinin of avian influenza virus and suppresses viral infection in cells | PloS one |
| 2015 | Mittelberger, F., Meyer, C., Waetzig, G. H., Zacharias, M. | RAID3-An interleukin-6 receptor-binding aptamer with post-selective modification-resistant affinity | RNA biology |
| 2015 | Mondragón, E., & Maher III, L. J. | RNA aptamer inhibitors of a restriction endonuclease | Nucleic acids research |
| 2017 | Lee, J. H., & Lee, M. J. | Isolation and Characterization of RNA Aptamers against a Proteasome‐Associated Deubiquitylating Enzyme UCH37 | ChemBioChem |
| 2012 | Ray, P., Rialon-Guevara, KL., Veras, E., Sullenger, BA., & White, RR. | Comparing human pancreatic cell secretomes by in vitro aptamer selection identifies cyclophilin B as a candidate pancreatic cancer biomarker | Journal of Clinical Investgation |
| 2013 | Ray, P., Sullenger, BA., & White, RR. | Further characterization of the target of a potential aptamer biomarker for pancreatic cancer: cyclophilin B and its posttranslational modifications | Nucleic Acid Therapeutics |
| 2014 | Xu, D., Chatakonda, VK., Kourtidis, A., Conklin, DS., & Shi, H. | In search of novel drug target sites on estrogen receptors using RNA aptamers | Nucleic Acid Therapeutics |
| 2012 | Lee, YJ., Han, SR., Maeng, JS., Cho, YJ., & Lee, SW. | In vitro selection of Escherichia coli O157:H7-specific RNA aptamer | Biochemical and Biophysical Research Communications |
| 2014 | Suenaga, E., & Kumar, PK. | An aptamer that binds efficiently to the hemagglutinins of highly pathogenic avian influenza viruses (H5N1 and H7N7) and inhibits hemagglutinin-glycan interactions | Acta Biomaterialia |
| 2011 | Ishiguro, A., Akiyama, T., Adachi, H., Inoue, J., & Nakamura, Y. | Therapeutic potential of anti-interleukin-17A aptamer: suppression of interleukin-17A signaling and attenuation of autoimmunity in two mouse models | Arthritis Rheum |
| 2013 | Pratico, ED., Sullenger, BA., & Nair, SK. | Identification and characterization of an agonistic aptamer against the T cell costimulatory receptor, OX40 | Nucleic Acid Therapeutics |
| 2007 | Suenaga, E., & Kumar, PK. Sando, S., Ogawa, A., Nishi, T. | In vitro selection of RNA aptamer against Escherichia coli release factor 1 | Bioorganic & Medicinal Chemistry Letters |
| 2010 | Huang, Z., Wang, X., & Gao, G. | Analyses of SELEX-derived ZAP-binding RNA aptamers suggest that the binding specificity is determined by both structure and sequence of the RNA | Protein Cell |
| 2000 | Tok, J. B., Cho, J., & Rando, R. R. | RNA aptamers that specifically bind to a 16S ribosomal RNA decoding region construct | Nucleic acids research |
| 1999 | Scarabino, D., Crisari, A., Lorenzini, S., Williams, K., & Tocchini-Valentini, G. P. | tRNA prefers to kiss | The EMBO journal |
| 1993 | Jellinek, D., Lynott, C. K., Rifkin, D. B., & Janjić, N. | High-affinity RNA ligands to basic fibroblast growth factor inhibit receptor binding | Proceedings of the National Academy of Sciences of the United States of America |
| 1997 | Cho, B., Taylor, D. C., Nicholas, H. B., Jr, & Schmidt, F. J. | Interacting RNA species identified by combinatorial selection | Bioorganic & medicinal chemistry |
| 2010 | Horii, K., Omi, K., Yoshida, Y., Imai, Y., Sakai, N. | Development of a sphingosylphosphorylcholine detection system using RNA aptamers | Molecules |
| 1997 | Weiss, S., Proske, D., Neumann, M., Groschup, M. H. | RNA aptamers specifically interact with the prion protein PrP | Journal of virology |
| 2017 | Macedo, B., & Cordeiro, Y. | Unraveling Prion Protein Interactions with Aptamers and Other PrP-Binding Nucleic Acids | International journal of molecular sciences |
| 2004 | Hirao, I., Harada, Y., Nojima, T., Osawa, Y., Masaki, H., & Yokoyama, S. | In vitro selection of RNA aptamers that bind to colicin E3 and structurally resemble the decoding site of 16S ribosomal RNA | Biochemistry |
| 2006 | Mercey, R., Lantier, I., Maurel, M. C., Grosclaude, J., Lantier, F., & Marc, D. | Fast, reversible interaction of prion protein with RNA aptamers containing specific sequence patterns | Archives of virology |
| 2005 | Pan, Q., Zhang, X. L., Wu, H. Y., He, P. W., Wang, F. | Aptamers that preferentially bind type IVB pili and inhibit human monocytic-cell invasion by Salmonella enterica serovar typhi | Antimicrobial agents and chemotherapy |
| 1999 | Takeno, H., Yamamoto, S., Tanaka, T., Sakano, Y., & Kikuchi, Y. | Selection of an RNA molecule that specifically inhibits the protease activity of subtilisin | Journal of biochemistry |
| 1997 | Klug, S. J., Hüttenhofer, A., Kromayer, M., & Famulok, M. | In vitro and in vivo characterization of novel mRNA motifs that bind special elongation factor SelB | Proceedings of the National Academy of Sciences of the United States of America |
| 1999 | Klug, S. J., Hüttenhofer, A., & Famulok, M. | In vitro selection of RNA aptamers that bind special elongation factor SelB, a protein with multiple RNA-binding sites, reveals one major interaction domain at the carboxyl terminus | RNA |
| 1998 | Bell, S. D., Denu, J. M., Dixon, J. E., & Ellington, A. D. | RNA molecules that bind to and inhibit the active site of a tyrosine phosphatase | The Journal of biological chemistry |
| 2005 | Dubey, A. K., Baker, C. S., Romeo, T., & Babitzke, P. | RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction | RNA |
| 2002 | Szkaradkiewicz, K., Nanninga, M., Nesper-Brock, M. | RNA aptamers directed against release factor 1 from Thermus thermophilus | FEBS letters |
| 2004 | Ferrer-Orta,& Verdaguer, N. | Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA | The Journal of biological chemistry |
| 2006 | Ellingham, M., & Stonehouse, N. J. | Selection and characterization of RNA aptamers to the RNA-dependent RNA polymerase from foot-and-mouth disease virus | RNA |
| 2007 | Du, M., Ulrich, H., Zhao, X., Aronowski, J., & Jayaraman, V. | Water soluble RNA based antagonist of AMPA receptors | Neuropharmacology |
| 2006 | Rentmeister, & Famulok, M. | RNA aptamers selectively modulate protein recruitment to the cytoplasmic domain of beta-secretase BACE1 in vitro | RNA |
| 2006 | Gopinath, S. C., Balasundaresan, D., Akitomi, J., & Mizuno, H. | An RNA aptamer that discriminates bovine factor IX from human factor IX | Journal of biochemistry |
| 2005 | Mochizuki,& Nakamura, Y. | High affinity RNA for mammalian initiation factor 4E interferes with mRNA-cap binding and inhibits translation | RNA |
| 2006 | Gening, L. V., & Miller, H. | RNA aptamers selected against DNA polymerase beta inhibit the polymerase activities of DNA polymerases beta and kappa | Nucleic acids research |
| 2006 | Ohuchi, S. P., Ohtsu, T., & Nakamura, Y. | Selection of RNA aptamers against recombinant transforming growth factor-beta type III receptor displayed on cell surface | Biochimie |
| 2006 | Lee, H. K., & Jeong, S. | Modulation of oncogenic transcription and alternative splicing by beta-catenin and an RNA aptamer in colon cancer cells | Cancer research |
| 1986 | Satow Y, Cohen GH, Padlan EA, Davies DR | Phosphocholine binding immunoglobulin Fab McPC603. An X-ray diffraction study at 2.7 A | Journal of molecular biology |
| 2002 | Carola Hunte 1, Hartmut Michel. | Crystallisation of membrane proteins mediated by antibody fragments | Current opinion in structural biology |
| 2007 | Day PW, Rasmussen SG, Parnot C, Fung JJ, Masood A | A monoclonal antibody for G protein-coupled receptor crystallography | Nature methods |
| 2009 | Koide S. | Engineering of recombinant crystallization chaperones | Current opinion in structural biology |
| 2011 | Paige, J. S., Wu, K. Y., & Jaffrey, S. R. | RNA mimics of green fluorescent protein | Science |
| 2011 | Koldobskaya Y, Duguid EM, Shechner DM, Suslov NB, Ye J | A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination | Nature structural & molecular biology |
| 2014 | Huang H, Suslov NB, Li NS, Shelke SA, Evans ME | A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore | Nat Chem Biol |
| 2015 | DasGupta, S., Shelke, S. A., Li, N. S., & Piccirilli, J. A. | Spinach RNA aptamer detects lead(II) with high selectivity | Chemical communications |
| 2016 | Kikuchi, N., & Kolpashchikov, D. M. | Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures | Chembiochem : a European journal of chemical biology |
| 2018 | Koirala D, Shelke SA, Dupont M, Ruiz S, DasGupta S | Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography | Nucleic acids research |
| 2021 | Dao, N. T., Haselsberger, R., Khuc, M. T., Phan, A. T. | Photophysics of DFHBI bound to RNA aptamer Baby Spinach | Scientific reports |
| 2022 | Zon G | Recent advances in aptamer applications for analytical biochemistry | Anal Biochem |
| 2022 | Anisuzzaman, S., Geraskin, I. M., Ilgu, M., Bendickson, L. | Ligands with polyfluorophenyl moieties promote a local structural rearrangement in the Spinach2 and Broccoli aptamers that increases ligand affinities | RNA |
| 2022 | Yu, Z., Wang, Y., Mei, F., Yan, H., Jin, Z., Zhang, P. | Spinach-based RNA mimicking GFP in plant cells | Functional & integrative genomics |
| 2004 | Lee SY, Jeong S. | In vitro selection and characterization of TCF-1 binding RNA aptamers | Mol Cells |
| 2005 | Lee SK, Park MW, Yang EG, Yu J, Jeong S. | An RNA aptamer that binds to the beta-catenin interaction domain of TCF-1 protein | Biochem Biophys Res Commun |
| 2005 | Park MW, Choi KH, Jeong S. | Inhibition of the DNA binding by the TCF-1 binding RNA aptamer | Biochem Biophys Res Commun |
| 2006 | Choi KH, Park MW, Lee SY, Jeon MY, Kim MY, Lee HK | Intracellular expression of the T-cell factor-1 RNA aptamer as an intramer | Mol Cancer Ther |
| 2003 | Chen CH, Chernis GA, Hoang VQ, Landgraf R. | Inhibition of heregulin signaling by an aptamer that preferentially binds to the oligomeric form of human epidermal growth factor receptor-3 | Proc Natl Acad Sci U S A |
| 2017 | Yu X, Ghamande S, Liu H, Xue L, Zhao S, Tan W | Targeting EGFR/HER2/HER3 with a Three-in-One Aptamer-siRNA Chimera Confers Superior Activity against HER2+ Breast Cancer | Mol Ther Nucleic Acids |
| 2004 | Mori T, Oguro A, Ohtsu T, Nakamura Y. | RNA aptamers selected against the receptor activator of NF-kappaB acquire general affinity to proteins of the tumor necrosis factor receptor family | Nucleic Acids Res |
| 2004 | Theis MG, Knorre A, Kellersch B, Moelleken J, Wieland F, Kolanus W, Famulok M. | Discriminatory aptamer reveals serum response element transcription regulated by cytohesin-2 | Proc Natl Acad Sci U S A |
| 2009 | Mayer G, Lohberger A, Butzen S, Pofahl M, Blind M, Heckel A. | From selection to caged aptamers: identification of light-dependent ssDNA aptamers targeting cytohesin | Bioorg Med Chem Lett |
| 2013 | Niebel B, Wosnitza CI, Famulok M. | RNA-aptamers that modulate the RhoGEF activity of Tiam1 | Bioorg Med Chem |
| 2003 | Oguro A, Ohtsu T, Svitkin YV, Sonenberg N, Nakamura Y. | RNA aptamers to initiation factor 4A helicase hinder cap-dependent translation by blocking ATP hydrolysis | RNA |
| 2006 | Miyakawa S, Oguro A, Ohtsu T, Imataka H, Sonenberg N, Nakamura Y. | RNA aptamers to mammalian initiation factor 4G inhibit cap-dependent translation by blocking the formation of initiation factor complexes | RNA |
| 2004 | Cho JS, Lee YJ, Shin KS, Jeong S, Park J, Lee SW. | In vitro selection of specific RNA aptamers for the NFAT DNA binding domain | Mol Cells |
| 2002 | Bae SJ, Oum JH, Sharma S, Park J, Lee SW. | In vitro selection of specific RNA inhibitors of NFATc | Biochem Biophys Res Commun |
| 2015 | Malsagova KA, Ivanov YD, Pleshakova TO, Kozlov AF, Krohin NV | [SOI-nanowire biosensor for the detection of D-NFAT 1 protein] | Biomed Khim |
| 2021 | Yun Y, Zhang Y, Zhang C, Huang L, Tan S, Wang P, Vilariño-Gúell C | Regulator of calcineurin 1 is a novel RNA-binding protein to regulate neuronal apoptosis | Mol Psychiatry |
| 2005 | Plummer KA, Carothers JM, Yoshimura M, Szostak JW, Verdine GL. | In vitro selection of RNA aptamers against a composite small molecule-protein surface | Nucleic Acids Res |
| 2004 | Yan X, Gao X, Zhang Z. | Isolation and characterization of 2'-amino-modified RNA aptamers for human TNFalpha | Genomics Proteomics Bioinformatics |
| 2003 | Guo KT, Yan XR, Huang GJ, Xu CX, Chai YS, Zhang ZQ. | [Screening and characterization of DNA aptamers with hTNF-alpha binding and neutralizing activity] | Sheng Wu Gong Cheng Xue Bao |
| 2020 | Mashayekhi K, Ganji A, Sankian M. | Designing a new dimerized anti human TNF-α aptamer with blocking activity | Biotechnol Prog |
| 2003 | Liu X, Zhang D, Cao G, Yang G, Ding H | RNA aptamers specific for bovine thrombin | J Mol Recognit |
| 2003 | Hwang B, Han K, Lee SW. | Prevention of passively transferred experimental autoimmune myasthenia gravis by an in vitro selected RNA aptamer | FEBS Lett |
| 2002 | Hwang B, Lee SW. | Improvement of RNA aptamer activity against myasthenic autoantibodies by extended sequence selection | Biochem Biophys Res Commun |
| 2013 | Shigdar, S., Qiao, L., Zhou, S. F., Xiang, D., Wang, T., Li, Y. | RNA aptamers targeting cancer stem cell marker CD133 | Cancer letters |
| 2006 | Yang, C., Yan, N., Parish, J., Wang, X., Shi, Y., & Xue, D. | RNA aptamers targeting the cell death inhibitor CED-9 induce cell killing in Caenorhabditis elegans | The Journal of biological chemistry |
| 1994 | Conrad, R., Keranen, L. M., Ellington, A. D., & Newton, A. C. | Isozyme-specific inhibition of protein kinase C by RNA aptamers | The Journal of biological chemistry |
| 1996 | Conrad, R., & Ellington, A. D. | Detecting immobilized protein kinase C isozymes with RNA aptamers | Analytical biochemistry |
| 2018 | Powell Gray, B., Kelly, L., Ahrens, D. P., Barry, A. P., Kratschmer, C. | Tunable cytotoxic aptamer-drug conjugates for the treatment of prostate cancer | Proceedings of the National Academy of Sciences of the United States of America |
| 2015 | Moosavian, S. A., Jaafari, M. R., Taghdisi, S. M., Mosaffa, F. | Development of RNA aptamers as molecular probes for HER2(+) breast cancer study using cell-SELEX | Iranian journal of basic medical sciences |
| 2016 | Iaboni, M., Fontanella, R., Rienzo, A., Capuozzo, M., Nuzzo, S. | Targeting Insulin Receptor with a Novel Internalizing Aptamer | Molecular therapy. Nucleic acids |
| 2008 | Goers, E. S., Voelker, R. B., Gates, D. P., & Berglund, J. A. | RNA binding specificity of Drosophila muscleblind | Biochemistry |
| 2002 | Bhattacharyya, S. N., Chatterjee, S., & Adhya, S. | Mitochondrial RNA import in Leishmania tropica: aptamers homologous to multiple tRNA domains that interact cooperatively or antagonistically at the inner membrane | Molecular and cellular biology |
| 2010 | Kolesnikova, O., Kazakova, H., Comte, C., Steinberg, S., Kamenski, P. | Selection of RNA aptamers imported into yeast and human mitochondria | RNA |
| 2014 | Tawaraya, Y., Hyodo, M., Ara, M. N., Yamada, Y., & Harashima, H. | RNA aptamers for targeting mitochondria using a mitochondria-based SELEX method | Biological & pharmaceutical bulletin |
| 2016 | Yamada, Y., Furukawa, R., & Harashima, H. | A Dual-Ligand Liposomal System Composed of a Cell-Penetrating Peptide and a Mitochondrial RNA Aptamer Synergistically Facilitates Cellular Uptake and Mitochondrial Targeting | Journal of pharmaceutical sciences |
| 1997 | Hirao, I., Yoshinari, S., Yokoyama, S., Endo, Y., & Ellington, A. D. | In vitro selection of aptamers that bind to ribosome-inactivating toxins | Nucleic acids symposium series |
| 2000 | Hirao, I., Madin, K., Endo, Y., Yokoyama, S., & Ellington, A. D. | RNA aptamers that bind to and inhibit the ribosome-inactivating protein, pepocin | The Journal of biological chemistry |
| 2000 | Fukusho, S., Furusawa, H., & Okahata, Y. | In vitro selection and analysis of RNA aptamer recognize arginine-rich motif (ARM) model peptide on a QCM | Nucleic acids symposium series |
| 2002 | Fukusho, S., Furusawa, H., & Okahata, Y. | In vitro selection and evaluation of RNA aptamers that recognize arginine-rich-motif model peptide on a quartz-crystal microbalance | Chemical communications |
| 2014 | Furusawa, H., Fukusho, S., & Okahata, Y. | Arginine arrangement of bacteriophage λ N-peptide plays a role as a core motif in GNRA tetraloop RNA binding | Chembiochem : a European journal of chemical biology |
| 1997 | Shi, H., Hoffman, B. E., & Lis, J. T. | A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52 | Molecular and cellular biology |
| 1999 | Shi, H., Hoffman, B. E., & Lis, J. T. | RNA aptamers as effective protein antagonists in a multicellular organism | Proceedings of the National Academy of Sciences of the United States of America |
| 2003 | Kim, S., Shi, H., Lee, D. K., & Lis, J. T. | Specific SR protein-dependent splicing substrates identified through genomic SELEX | Nucleic acids research |
| 2009 | Xu, D., & Shi, H. | Composite RNA aptamers as functional mimics of proteins | Nucleic acids research |
| 1990 | Tuerk, C., & Gold, L. | Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase | Science |
| 2020 | Camorani, S., Granata, I., Collina, F., Leonetti, F., Cantile, M., Botti, G. | Novel Aptamers Selected on Living Cells for Specific Recognition of Triple-Negative Breast Cancer | iScience |
| 1999 | Homann, M., & Göringer, H. U. | Combinatorial selection of high affinity RNA ligands to live African trypanosomes | Nucleic acids research |
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| 2012 | Someya, T., Baba, S., Fujimoto, M., Kawai, G., Kumasaka, T., & Nakamura, K. | Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq | Nucleic acids research |
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| 2023 | Watkins, D., & Arya, D. | Models of Hfq interactions with small non-coding RNA in Gram-negative and Gram-positive bacteria | Frontiers in cellular and infection microbiology |
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| 2019 | Iida, M., Mashima, T., Yamaoki, Y., So, M., Nagata, T., & Katahira, M. | The anti-prion RNA aptamer R12 disrupts the Alzheimer's disease-related complex between prion and amyloid β | FEBS Journal |
| 2011 | Steber, M., Arora, A., Hofmann, J., Brutschy, B., & Suess, B. | Mechanistic basis for RNA aptamer-based induction of TetR | Chembiochem : a European journal of chemical biology |
| 2017 | Atanasov, J., Groher, F., Weigand, J. E., & Suess, B. | Design and implementation of a synthetic pre-miR switch for controlling miRNA biogenesis in mammals | Nucleic acids research |
| 2020 | Grau, F. C., Jaeger, J., Groher, F., Suess, B., & Muller, Y. A. | The complex formed between a synthetic RNA aptamer and the transcription repressor TetR is a structural and functional twin of the operator DNA-TetR regulator complex | Nucleic acids research |
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| 2000 | Yamamoto, R., Baba, T., & Kumar, P. K. | Molecular beacon aptamer fluoresces in the presence of Tat protein of HIV-1 | Genes to cells |
| 2005 | Tombelli, S., Minunni, M., Luzi, E., & Mascini, M. | Aptamer-based biosensors for the detection of HIV-1 Tat protein | Bioelectrochemistry (Amsterdam |
| 2013 | Rahim Ruslinda, A., Tanabe, K., Ibori, S., Wang, X., & Kawarada, H. | Effects of diamond-FET-based RNA aptamer sensing for detection of real sample of HIV-1 Tat protein | Biosensors & bioelectronics |
| 2008 | Miyakawa, S., Nomura, Y., Sakamoto, T., Yamaguchi, Y., Kato, K., Yamazaki, S., & Nakamura, Y. | Structural and molecular basis for hyperspecificity of RNA aptamer to human immunoglobulin G | RNA |
| 2008 | Sugiyama, S., Nomura, Y., Sakamoto, T., Kitatani, T., Kobayashi, A., Miyakawa, S. | Crystallization and preliminary X-ray diffraction studies of an RNA aptamer in complex with the human IgG Fc fragment | Acta crystallographica. Section F |
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| 2013 | Ma, J., Wang, M. G., Mao, A. H., Zeng, J. Y., Liu, Y. Q. | Target replacement strategy for selection of DNA aptamers against the Fc region of mouse IgG | Genetics and molecular research : GMR |
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| 2003 | Cassiday, L. A., & Maher, L. J., 3rd. | Yeast genetic selections to optimize RNA decoys for transcription factor NF-kappa B | Proceedings of the National Academy of Sciences of the United States of America |
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| 2002 | Rusconi, C. P., Scardino, E., Layzer, J., Pitoc, G. A., Ortel, T. L., Monroe, D., & Sullenger, B. A. | RNA aptamers as reversible antagonists of coagulation factor IXa | Nature |
| 2004 | Jeter, M. L., Ly, L. V., Fortenberry, Y. M., Whinna, H. C., White, R. R. | RNA aptamer to thrombin binds anion-binding exosite-2 and alters protease inhibition by heparin-binding serpins | FEBS letters |
| 2008 | Long, S. B., Long, M. B., White, R. R., & Sullenger, B. A. | Crystal structure of an RNA aptamer bound to thrombin | RNA |
| 2016 | Abeydeera, N. D., Egli, M., Cox, N., Mercier, K., Conde, J. N., Pallan, P. S. | Evoking picomolar binding in RNA by a single phosphorodithioate linkage | Nucleic acids research |
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